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samuroi 0.1 documentation
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A
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B
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C
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D
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E
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F
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I
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J
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K
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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W
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X
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Y
_
__call__() (samuroi.masks.mask.Mask method)
__weakref__ (samuroi.masks.mask.Mask attribute)
A
active_frame (samuroi.SamuROIData attribute)
active_frame_changed (samuroi.SamuROIData attribute)
add() (samuroi.maskset.MaskSet method)
added (samuroi.maskset.MaskSet attribute)
amplitude (samuroi.event.biexponential.BiExponentialParameters attribute)
append() (samuroi.masks.branch.BranchMask method)
(samuroi.util.branch.Branch method)
(samuroi.util.postprocessors.PostProcessorPipe method)
B
bandstop() (in module samuroi.plugins.baseline)
baseline (samuroi.event.biexponential.BiExponentialParameters attribute)
BiExponentialParameters (class in samuroi.event.biexponential)
Branch (class in samuroi.util.branch)
branches (samuroi.plugins.swc.SWCFile attribute)
BranchMask (class in samuroi.masks.branch)
BranchMaskCreator (class in samuroi.util.branchmaskcreator)
branchmasks (samuroi.SamuROIData attribute)
C
c (samuroi.event.template_matching.ClementsBekkersResult attribute)
center (samuroi.masks.circle.CircleMask attribute)
changed (samuroi.masks.branch.BranchMask attribute)
children (samuroi.masks.branch.BranchMask attribute)
(samuroi.masks.segmentation.Segmentation attribute)
CircleMask (class in samuroi.masks.circle)
circlemasks (samuroi.SamuROIData attribute)
clear() (samuroi.maskset.MaskSet method)
ClementsBekkersResult (class in samuroi.event.template_matching)
corners (samuroi.util.branch.Branch attribute)
crit (samuroi.event.template_matching.ClementsBekkersResult attribute)
D
data (samuroi.masks.branch.BranchMask attribute)
(samuroi.SamuROIData attribute)
(samuroi.masks.segment.SegmentMask attribute)
(samuroi.masks.segmentation.Segmentation attribute)
data_changed (samuroi.SamuROIData attribute)
default_radius (samuroi.util.branchmaskcreator.BranchMaskCreator attribute)
DetrendPostProcessor (class in samuroi.util.postprocessors)
discard() (samuroi.maskset.MaskSet method)
E
enabled (samuroi.util.branchmaskcreator.BranchMaskCreator attribute)
(samuroi.util.maskcreator.MaskCreator attribute)
(samuroi.util.pixelmaskcreator.PixelMaskCreator attribute)
(samuroi.util.polymaskcreator.PolyMaskCreator attribute)
Event (class in samuroi.util.event)
F
from_hdf5() (samuroi.masks.branch.BranchMask static method)
(samuroi.masks.circle.CircleMask static method)
(samuroi.masks.pixel.PixelMask static method)
(samuroi.masks.polygon.PolygonMask static method)
(samuroi.masks.segmentation.Segmentation static method)
I
indices (samuroi.event.template_matching.ClementsBekkersResult attribute)
isdisjoint() (samuroi.maskset.MaskSet method)
J
join() (samuroi.masks.segment.SegmentMask method)
K
kernel (samuroi.event.template_matching.ClementsBekkersResult attribute)
kernel() (samuroi.event.biexponential.BiExponentialParameters method)
L
length (samuroi.util.branch.Branch attribute)
linbleeched_deltaF() (in module samuroi.plugins.baseline)
linbleeched_F0() (in module samuroi.plugins.baseline)
line (samuroi.util.polymaskcreator.PolyMaskCreator.Status attribute)
linescan() (samuroi.masks.branch.BranchMask method)
load_andor() (in module samuroi.plugins.andor)
load_hdf5() (samuroi.SamuROIData method)
load_swc() (samuroi.SamuROIData method)
lowerleft (samuroi.masks.polygon.PolygonMask attribute)
M
Mask (class in samuroi.masks.mask)
MaskCreator (class in samuroi.util.maskcreator)
masks (samuroi.SamuROIData attribute)
MaskSet (class in samuroi.maskset)
median_deltaF() (in module samuroi.plugins.baseline)
median_F0() (in module samuroi.plugins.baseline)
morphology (samuroi.SamuROIData attribute)
morphology_changed (samuroi.SamuROIData attribute)
move() (samuroi.masks.branch.BranchMask method)
(samuroi.masks.circle.CircleMask method)
(samuroi.masks.polygon.PolygonMask method)
(samuroi.masks.segment.SegmentMask method)
MovingAveragePostProcessor (class in samuroi.util.postprocessors)
N
nbranches (samuroi.plugins.swc.SWCFile attribute)
no_postprocessor (samuroi.SamuROIData attribute)
normalize() (in module samuroi.util.branch)
nquadrilaterals (samuroi.util.branch.Branch attribute)
O
onclick() (samuroi.util.branchmaskcreator.BranchMaskCreator method)
(samuroi.util.maskcreator.MaskCreator method)
(samuroi.util.pixelmaskcreator.PixelMaskCreator method)
(samuroi.util.polymaskcreator.PolyMaskCreator method)
onkey() (samuroi.util.branchmaskcreator.BranchMaskCreator method)
(samuroi.util.maskcreator.MaskCreator method)
(samuroi.util.pixelmaskcreator.PixelMaskCreator method)
(samuroi.util.polymaskcreator.PolyMaskCreator method)
outline (samuroi.masks.branch.BranchMask attribute)
(samuroi.masks.polygon.PolygonMask attribute)
(samuroi.masks.segment.SegmentMask attribute)
(samuroi.util.branch.Branch attribute)
overlay (samuroi.SamuROIData attribute)
overlay_changed (samuroi.SamuROIData attribute)
P
parent (samuroi.masks.segmentation.Segmentation.Child attribute)
parse_txt() (in module samuroi.plugins.andor)
perpedndicular1() (in module samuroi.util.branch)
PixelMask (class in samuroi.masks.pixel)
PixelMaskCreator (class in samuroi.util.pixelmaskcreator)
PixelMaskCreator.Status (class in samuroi.util.pixelmaskcreator)
pixelmasks (samuroi.SamuROIData attribute)
PolygonMask (class in samuroi.masks.polygon)
PolyMaskCreator (class in samuroi.util.polymaskcreator)
PolyMaskCreator.Status (class in samuroi.util.polymaskcreator)
polymasks (samuroi.SamuROIData attribute)
pop() (samuroi.maskset.MaskSet method)
postprocessor (samuroi.SamuROIData attribute)
postprocessor_changed (samuroi.SamuROIData attribute)
PostProcessorPipe (class in samuroi.util.postprocessors)
power_spectrum() (in module samuroi.plugins.baseline)
preremove (samuroi.maskset.MaskSet attribute)
Q
quadrilaterals (samuroi.util.branch.Branch attribute)
R
radius (samuroi.masks.circle.CircleMask attribute)
(samuroi.util.branch.Branch attribute)
remove() (samuroi.maskset.MaskSet method)
removed (samuroi.maskset.MaskSet attribute)
S
s (samuroi.event.template_matching.ClementsBekkersResult attribute)
samuroi.event (module)
samuroi.event.biexponential (module)
samuroi.event.template_matching (module)
samuroi.gui (module)
samuroi.gui.menus (module)
samuroi.gui.roiitemmodel (module)
samuroi.gui.roitree (module)
samuroi.gui.samuroiwindow (module)
samuroi.gui.widgets (module)
samuroi.masks (module)
samuroi.masks.branch (module)
samuroi.masks.circle (module)
samuroi.masks.pixel (module)
samuroi.masks.polygon (module)
samuroi.masks.segment (module)
samuroi.masks.segmentation (module)
samuroi.plugins (module)
samuroi.plugins.andor (module)
samuroi.plugins.baseline (module)
samuroi.plugins.swc (module)
samuroi.plugins.tif (module)
samuroi.util (module)
samuroi.util.branch (module)
samuroi.util.branchmaskcreator (module)
samuroi.util.event (module)
samuroi.util.maskcreator (module)
samuroi.util.pixelmaskcreator (module)
samuroi.util.polymaskcreator (module)
samuroi.util.postprocessors (module)
SamuROIData (class in samuroi)
SamuROIWindow (in module samuroi)
save_hdf5() (samuroi.SamuROIData method)
scatter (samuroi.util.pixelmaskcreator.PixelMaskCreator.Status attribute)
Segmentation (class in samuroi.masks.segmentation)
Segmentation.Child (class in samuroi.masks.segmentation)
segmentationmasks (samuroi.SamuROIData attribute)
SegmentMask (class in samuroi.masks.segment)
segments (samuroi.masks.branch.BranchMask attribute)
split() (samuroi.masks.branch.BranchMask method)
(samuroi.masks.segment.SegmentMask method)
(samuroi.util.branch.Branch method)
stdv_deltaF() (in module samuroi.plugins.baseline)
stdv_F0() (in module samuroi.plugins.baseline)
SWCFile (class in samuroi.plugins.swc)
T
tau1 (samuroi.event.biexponential.BiExponentialParameters attribute)
tau2 (samuroi.event.biexponential.BiExponentialParameters attribute)
template_matching() (in module samuroi.event.template_matching)
threshold (samuroi.event.template_matching.ClementsBekkersResult attribute)
(samuroi.SamuROIData attribute)
threshold_changed (samuroi.SamuROIData attribute)
to_hdf5() (samuroi.masks.branch.BranchMask method)
(samuroi.masks.circle.CircleMask method)
(samuroi.masks.mask.Mask method)
(samuroi.masks.pixel.PixelMask method)
(samuroi.masks.polygon.PolygonMask method)
(samuroi.masks.segmentation.Segmentation method)
types() (samuroi.maskset.MaskSet method)
U
upperright (samuroi.masks.polygon.PolygonMask attribute)
W
weights (samuroi.masks.polygon.PolygonMask attribute)
X
x (samuroi.masks.pixel.PixelMask attribute)
(samuroi.masks.segmentation.Segmentation.Child attribute)
(samuroi.util.branch.Branch attribute)
(samuroi.util.pixelmaskcreator.PixelMaskCreator.Status attribute)
(samuroi.util.polymaskcreator.PolyMaskCreator.Status attribute)
Y
y (samuroi.masks.pixel.PixelMask attribute)
(samuroi.masks.segmentation.Segmentation.Child attribute)
(samuroi.util.branch.Branch attribute)
(samuroi.util.pixelmaskcreator.PixelMaskCreator.Status attribute)
(samuroi.util.polymaskcreator.PolyMaskCreator.Status attribute)
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samuroi 0.1 documentation
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